| 1 | N/A, N/A (NA) | N/A, N/A (NA) | 1610 | Search Flights | Route Profile |
| 2 | Fukuoka, Japan (RJFF) | Tokyo, Japan (RJTT) | 12 | Search Flights | Route Profile |
| 3 | Tokyo, Japan (RJTT) | Fukuoka, Japan (RJFF) | 10 | Search Flights | Route Profile |
| 4 | , Japan (RJBB) | , South Korea (RKSI) | 7 | Search Flights | Route Profile |
| 5 | , South Korea (RKSI) | , Japan (RJBB) | 7 | Search Flights | Route Profile |
| 6 | Tokyo, Japan (RJAA) | Taipei, Taiwan (RCTP) | 6 | Search Flights | Route Profile |
| 7 | , Japan (RJBB) | , China (ZSPD) | 5 | Search Flights | Route Profile |
| 8 | Kumamoto, Japan (RJFT) | Tokyo, Japan (RJTT) | 5 | Search Flights | Route Profile |
| 9 | Tokyo, Japan (RJTT) | Oita, Japan (RJFO) | 5 | Search Flights | Route Profile |
| 10 | , Japan (RJBB) | Hong Kong, Hong Kong (VHHH) | 5 | Search Flights | Route Profile |
| 11 | , China (ZSPD) | , Japan (RJBB) | 5 | Search Flights | Route Profile |
| 12 | Hiroshima, Japan (RJOA) | Tokyo, Japan (RJTT) | 4 | Search Flights | Route Profile |
| 13 | , Japan (RJBB) | Naha, Japan (ROAH) | 4 | Search Flights | Route Profile |
| 14 | Tokyo, Japan (RJTT) | Taipei, Taiwan (RCSS) | 4 | Search Flights | Route Profile |
| 15 | Taipei, Taiwan (RCTP) | Tokyo, Japan (RJAA) | 4 | Search Flights | Route Profile |
| 16 | Tokyo, Japan (RJAA) | Fukuoka, Japan (RJFF) | 4 | Search Flights | Route Profile |
| 17 | Tokyo, Japan (RJAA) | , China (ZSPD) | 4 | Search Flights | Route Profile |
| 18 | Kitakyushu, Japan (RJFR) | Tokyo, Japan (RJTT) | 4 | Search Flights | Route Profile |
| 19 | Okayama, Japan (RJOB) | Tokyo, Japan (RJTT) | 4 | Search Flights | Route Profile |
| 20 | Nagasaki, Japan (RJFU) | Tokyo, Japan (RJTT) | 3 | Search Flights | Route Profile |
| 21 | Kimhae, Korea, Republic of (RKPK) | , Japan (RJBB) | 3 | Search Flights | Route Profile |
| 22 | , Japan (RJBB) | Sapporo, Japan (RJCC) | 3 | Search Flights | Route Profile |
| 23 | Tokyo, Japan (RJTT) | Hiroshima, Japan (RJOA) | 3 | Search Flights | Route Profile |
| 24 | , Japan (RJBB) | Kimhae, Korea, Republic of (RKPK) | 3 | Search Flights | Route Profile |
| 25 | Tokyo, Japan (RJTT) | Matsuyama, Japan (RJOM) | 3 | Search Flights | Route Profile |
| 26 | , China (ZSPD) | Tokyo, Japan (RJAA) | 3 | Search Flights | Route Profile |
| 27 | Tokyo, Japan (RJAA) | Hong Kong, Hong Kong (VHHH) | 3 | Search Flights | Route Profile |
| 28 | Tokyo, Japan (RJTT) | Kumamoto, Japan (RJFT) | 3 | Search Flights | Route Profile |
| 29 | , Japan (RJBB) | Tokyo, Japan (RJTT) | 3 | Search Flights | Route Profile |
| 30 | Tokyo, Japan (RJTT) | Takamatsu, Japan (RJOT) | 3 | Search Flights | Route Profile |
| 31 | Fukuoka, Japan (RJFF) | Tokyo, Japan (RJAA) | 3 | Search Flights | Route Profile |
| 32 | Tokyo, Japan (RJTT) | , Japan (RJBE) | 2 | Search Flights | Route Profile |
| 33 | , Japan (RJGG) | , South Korea (RKSI) | 2 | Search Flights | Route Profile |
| 34 | Tokyo, Japan (RJTT) | Kagoshima, Japan (RJFK) | 2 | Search Flights | Route Profile |
| 35 | Takamatsu, Japan (RJOT) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 36 | Kumamoto, Japan (RJFT) | Osaka, Japan (RJOO) | 2 | Search Flights | Route Profile |
| 37 | Tokyo, Japan (RJTT) | Hong Kong, Hong Kong (VHHH) | 2 | Search Flights | Route Profile |
| 38 | Tokyo, Japan (RJTT) | , China (ZSPD) | 2 | Search Flights | Route Profile |
| 39 | , Japan (RJBB) | Ishigaki, Japan (ROIG) | 2 | Search Flights | Route Profile |
| 40 | Tokyo, Japan (RJTT) | Iwakuni, Japan (RJOI) | 2 | Search Flights | Route Profile |
| 41 | Naha, Japan (ROAH) | Osaka, Japan (RJOO) | 2 | Search Flights | Route Profile |
| 42 | Sendai, Japan (RJSS) | Sapporo, Japan (RJCC) | 2 | Search Flights | Route Profile |
| 43 | Tokyo, Japan (RJTT) | Nagasaki, Japan (RJFU) | 2 | Search Flights | Route Profile |
| 44 | Oita, Japan (RJFO) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 45 | Tokyo, Japan (RJTT) | Yamaguchi, Japan (RJDC) | 2 | Search Flights | Route Profile |
| 46 | Tokyo, Japan (RJTT) | Beijing, China (ZBAA) | 2 | Search Flights | Route Profile |
| 47 | Hangzhou, China (ZSHC) | , Japan (RJBB) | 2 | Search Flights | Route Profile |
| 48 | Sapporo, Japan (RJCC) | , Japan (RJBB) | 2 | Search Flights | Route Profile |
| 49 | Kumamoto, Japan (RJFT) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 50 | Tokyo, Japan (RJTT) | Guangzhou, China (ZGGG) | 2 | Search Flights | Route Profile |
| 51 | Taipei, Taiwan (RCSS) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 52 | Tokyo, Japan (RJTT) | Miyazaki, Japan (RJFM) | 2 | Search Flights | Route Profile |
| 53 | Matsuyama, Japan (RJOM) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 54 | Tokyo, Japan (RJTT) | Kitakyushu, Japan (RJFR) | 2 | Search Flights | Route Profile |
| 55 | Hong Kong, Hong Kong (VHHH) | Tokyo, Japan (RJAA) | 2 | Search Flights | Route Profile |
| 56 | Tokyo, Japan (RJAA) | Kaohsiung, Taiwan (RCKH) | 2 | Search Flights | Route Profile |
| 57 | Seoul, Korea, Republic of (RKSS) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 58 | Kagoshima, Japan (RJFK) | Osaka, Japan (RJOO) | 2 | Search Flights | Route Profile |
| 59 | , Japan (RJBB) | Fukuoka, Japan (RJFF) | 2 | Search Flights | Route Profile |
| 60 | Miyazaki, Japan (RJFM) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 61 | Kagoshima, Japan (RJFK) | Tokyo, Japan (RJTT) | 2 | Search Flights | Route Profile |
| 62 | Kaohsiung, Taiwan (RCKH) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 63 | Osaka, Japan (RJOO) | Miyazaki, Japan (RJFM) | 1 | Search Flights | Route Profile |
| 64 | , Japan (RJNS) | , South Korea (RKSI) | 1 | Search Flights | Route Profile |
| 65 | , China (ZSPD) | N/A, N/A (NA) | 1 | Search Flights | Route Profile |
| 66 | Istanbul, Turkey (LTBA) | Jeddah, Saudi Arabia (OEJN) | 1 | Search Flights | Route Profile |
| 67 | Chongqing, China (ZUCK) | Nanjing, China (ZSNJ) | 1 | Search Flights | Route Profile |
| 68 | Sapporo, Japan (RJCC) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 69 | Kuala Lumpur, Malaysia (WMKK) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 70 | Kanazawa, Japan (RJNK) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 71 | Chicago, United States (KORD) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 72 | Taegu, Korea, Republic of (RKTN) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 73 | Beijing, China (ZBAA) | Sendai, Japan (RJSS) | 1 | Search Flights | Route Profile |
| 74 | Tokyo, Japan (RJTT) | Seoul, Korea, Republic of (RKSS) | 1 | Search Flights | Route Profile |
| 75 | , Japan (RJBB) | Xiamen, China (ZSAM) | 1 | Search Flights | Route Profile |
| 76 | Chengdu, China (ZUUU) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 77 | Anchorage, United States (PANC) | Chicago, United States (KORD) | 1 | Search Flights | Route Profile |
| 78 | Matsuyama, Japan (RJOM) | Osaka, Japan (RJOO) | 1 | Search Flights | Route Profile |
| 79 | , Japan (RJBB) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 80 | Miyako, Japan (ROMY) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 81 | New York, United States (KJFK) | Seattle, United States (KSEA) | 1 | Search Flights | Route Profile |
| 82 | Honolulu, United States (PHNL) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 83 | N/A, N/A (NA) | Los Angeles, United States (KLAX) | 1 | Search Flights | Route Profile |
| 84 | Naha, Japan (ROAH) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 85 | , Japan (RJBB) | Sendai, Japan (RJSS) | 1 | Search Flights | Route Profile |
| 86 | Fukuoka, Japan (RJFF) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 87 | , China (ZYCC) | Cheju, South Korea (RKPC) | 1 | Search Flights | Route Profile |
| 88 | Sapporo, Japan (RJCC) | Kimhae, Korea, Republic of (RKPK) | 1 | Search Flights | Route Profile |
| 89 | Hong Kong, Hong Kong (VHHH) | New York, United States (KJFK) | 1 | Search Flights | Route Profile |
| 90 | , Japan (RJBE) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 91 | Shimojishima, Japan (RORS) | , Japan (RJBE) | 1 | Search Flights | Route Profile |
| 92 | , Japan (RJBB) | , China (ZSJN) | 1 | Search Flights | Route Profile |
| 93 | , Japan (RJBB) | Amami, Japan (RJKA) | 1 | Search Flights | Route Profile |
| 94 | , Japan (RJGG) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 95 | , Japan (RJGG) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 96 | Hong Kong, Hong Kong (VHHH) | Atlanta, United States (KATL) | 1 | Search Flights | Route Profile |
| 97 | Hong Kong, Hong Kong (VHHH) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 98 | , South Korea (RKSI) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 99 | Tokyo, Japan (RJAA) | , Qatar (OTHH) | 1 | Search Flights | Route Profile |
| 100 | Sapporo, Japan (RJCC) | Okayama, Japan (RJOB) | 1 | Search Flights | Route Profile |
| 101 | Kunming, China (ZPPP) | , China (ZSJN) | 1 | Search Flights | Route Profile |
| 102 | Tokyo, Japan (RJAA) | Abu Dhabi, United Arab Emirates (OMAA) | 1 | Search Flights | Route Profile |
| 103 | Kathmandu, Nepal (VNKT) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 104 | Tokyo, Japan (RJAA) | Kuala Lumpur, Malaysia (WMKK) | 1 | Search Flights | Route Profile |
| 105 | Tokushima, Japan (RJOS) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 106 | , Japan (RJGG) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 107 | , Japan (RJBB) | Seoul, Korea, Republic of (RKSS) | 1 | Search Flights | Route Profile |
| 108 | Fukuoka, Japan (RJFF) | Osaka, Japan (RJOO) | 1 | Search Flights | Route Profile |
| 109 | Fuzhou, China (ZSFZ) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 110 | Tokyo, Japan (RJAA) | Xi`an, China (ZLXY) | 1 | Search Flights | Route Profile |
| 111 | , Japan (RJBB) | Guangzhou, China (ZGGG) | 1 | Search Flights | Route Profile |
| 112 | San Francisco, United States (KSFO) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 113 | Fukuoka, Japan (RJFF) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 114 | Nagasaki, Japan (RJFU) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 115 | Osaka, Japan (RJOO) | Naha, Japan (ROAH) | 1 | Search Flights | Route Profile |
| 116 | , South Korea (RKSI) | Honolulu, United States (PHNL) | 1 | Search Flights | Route Profile |
| 117 | Beijing, China (ZBAA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 118 | Taipei, Taiwan (RCTP) | , Japan (RJSN) | 1 | Search Flights | Route Profile |
| 119 | Kagoshima, Japan (RJFK) | , Japan (RJBE) | 1 | Search Flights | Route Profile |
| 120 | Tokyo, Japan (RJTT) | Okayama, Japan (RJOB) | 1 | Search Flights | Route Profile |
| 121 | Cheju, South Korea (RKPC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 122 | Sapporo, Japan (RJCC) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 123 | Yulin, China (ZLYL) | Nanjing, China (ZSNJ) | 1 | Search Flights | Route Profile |
| 124 | Fuzhou, China (ZSFZ) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 125 | Kagoshima, Japan (RJFK) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 126 | Tokyo, Japan (RJAA) | Xiamen, China (ZSAM) | 1 | Search Flights | Route Profile |
| 127 | Tokyo, Japan (RJAA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 128 | Hong Kong, Hong Kong (VHHH) | , Japan (RJGG) | 1 | Search Flights | Route Profile |
| 129 | Tokyo, Japan (RJTT) | Honolulu, United States (PHNL) | 1 | Search Flights | Route Profile |
| 130 | Ninbo, China (ZSNB) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 131 | Tokyo, Japan (RJTT) | Shanghai, China (ZSSS) | 1 | Search Flights | Route Profile |
| 132 | Tokyo, Japan (RJAA) | Kimhae, Korea, Republic of (RKPK) | 1 | Search Flights | Route Profile |
| 133 | , Japan (RJBB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 134 | Chon Buri, Thailand (VTBS) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 135 | Amami, Japan (RJKA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 136 | , China (ZSPD) | Sapporo, Japan (RJCC) | 1 | Search Flights | Route Profile |
| 137 | Sapporo, Japan (RJCC) | , South Korea (RKSI) | 1 | Search Flights | Route Profile |
| 138 | Kimhae, Korea, Republic of (RKPK) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 139 | , China (ZSPD) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 140 | , Japan (RJBB) | Shenzhen, China (ZGSZ) | 1 | Search Flights | Route Profile |
| 141 | Miyazaki, Japan (RJFM) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 142 | Ishigaki, Japan (ROIG) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 143 | Tokyo, Japan (RJAA) | Istanbul, Turkey (LTBA) | 1 | Search Flights | Route Profile |
| 144 | , China (ZSJN) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 145 | Phuket, Thailand (VTSP) | Chon Buri, Thailand (VTBS) | 1 | Search Flights | Route Profile |
| 146 | N/A, N/A (NA) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 147 | Ho Chi Minh City, Viet Nam (VVTS) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 148 | , Japan (RJBE) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 149 | Yamaguchi, Japan (RJDC) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 150 | , Japan (RJNA) | Kumamoto, Japan (RJFT) | 1 | Search Flights | Route Profile |
| 151 | , Japan (RJSN) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 152 | Seoul, Korea, Republic of (RKSS) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 153 | Hanoi, Viet Nam (VVNB) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 154 | Helsinki, Finland (EFHK) | Hong Kong, Hong Kong (VHHH) | 1 | Search Flights | Route Profile |
| 155 | , Japan (RJBB) | Macau, China (VMMC) | 1 | Search Flights | Route Profile |
| 156 | Rivolto, Italy (LIPI) | Houston, United States (KIAH) | 1 | Search Flights | Route Profile |
| 157 | Kochi, Japan (RJOK) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 158 | Tokyo, Japan (RJTT) | Singapore, Singapore (WSSS) | 1 | Search Flights | Route Profile |
| 159 | , Japan (RJGG) | Beijing, China (ZBAA) | 1 | Search Flights | Route Profile |
| 160 | Hiroshima, Japan (RJOA) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 161 | Los Angeles, United States (KLAX) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 162 | Nanjing, China (ZSNJ) | Chongqing, China (ZUCK) | 1 | Search Flights | Route Profile |
| 163 | Tokyo, Japan (RJAA) | Hiroshima, Japan (RJOA) | 1 | Search Flights | Route Profile |
| 164 | San Francisco, United States (KSFO) | , China (ZSPD) | 1 | Search Flights | Route Profile |
| 165 | , South Korea (RKSI) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 166 | Beijing, China (ZBAA) | Tokyo, Japan (RJTT) | 1 | Search Flights | Route Profile |
| 167 | Xiamen, China (ZSAM) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 168 | Bangkok, Thailand (VTBD) | Kaohsiung, Taiwan (RCKH) | 1 | Search Flights | Route Profile |
| 169 | , Japan (RJBB) | Chon Buri, Thailand (VTBS) | 1 | Search Flights | Route Profile |
| 170 | Shenzhen, China (ZGSZ) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 171 | Osaka, Japan (RJOO) | Fukuoka, Japan (RJFF) | 1 | Search Flights | Route Profile |
| 172 | Tokyo, Japan (RJTT) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 173 | , Japan (RJBE) | Nagasaki, Japan (RJFU) | 1 | Search Flights | Route Profile |
| 174 | , Japan (RJGG) | Taipei, Taiwan (RCTP) | 1 | Search Flights | Route Profile |
| 175 | Tokyo, Japan (RJTT) | , South Korea (RKSI) | 1 | Search Flights | Route Profile |
| 176 | Macau, China (VMMC) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 177 | Fukuoka, Japan (RJFF) | , Japan (RJBB) | 1 | Search Flights | Route Profile |
| 178 | Hanoi, Viet Nam (VVNB) | Tokyo, Japan (RJAA) | 1 | Search Flights | Route Profile |
| 179 | Sapporo, Japan (RJCC) | Sendai, Japan (RJSS) | 1 | Search Flights | Route Profile |
